Replication of the (epi)genome

Our team studies how eukaryotic cells accurately replicate their chromosomes and preserve genome integrity during each cell division. Chromosome replication is a complex process that goes beyond copying DNA—it also involves assembling chromatin, maintaining epigenetic marks, and restoring full genomic function after replication. These steps are essential for preserving cellular identity and tissue health. Our research focuses on how replication forks manage these interconnected tasks across diverse chromatin environments and physiological conditions. Current projects investigate the role of the nuclear lamina in replication and genome stability, the link between DNA replication and DNA methylation maintenance, and how oxidative DNA damage affects chromatin and differentiation in BRAF-mutated thyroid cancers, with the goal of identifying new therapeutic strategies.

CURRENT RESERACH AXES

We are currently focusing our research on two main areas in the laboratory:

  • We study the role of nuclear proteins in the regulation of chromosome replication, with a particular emphasis on the interaction between genome replication and the association of chromatin with the nuclear lamina. Our research aims to discover how alterations in the nuclear lamina affect genome replication dynamics, the maintenance of heterochromatin, and the response to DNA damage.

  • We explore the connection between DNA replication and DNA methylation. Our goal is to understand the molecular mechanisms that link DNA replication with the process of maintaining DNA methylation, and how the dynamics of replication forks regulate the epigenome and influence cell fate.

team's expertise

OK-seq (Okazaki fragment sequencing)

Used to map replication forks and quantify initiation and termination events genome-wide across various models. This helps us study discontinuous strand synthesis in mammalian cells.

SCAR-seq (Sister Chromatids After Replication)

This method allows us to map proteins associated with replication forks to understand epigenome maintenance and genome integrity.

Cell Biology

members

publications & news from team 5:

Genome-wide measurement of DNA replication fork directionality and quantification of DNA replication initiation and termination with Okazaki fragment sequencing

OK-seq is a technique that sequences strand-specific Okazaki fragments to map replication initiation and termination in mammalian genomes. It quantifies

Monitoring and quantifying replication fork dynamics with high-throughput methods

The N. Petryk lab highlights in this work advances in quantitative technologies that deepen understanding of chromosome replication beyond DNA

Staying true to yourself: mechanisms of DNA methylation maintenance in mammals

N. Petryk co-authors this review of the mechanisms of DNA methylation in mammals and its biological importance.