Lab life

Next Unit Lab Meeting

Prochaine réunion d’unité

13/10/2025
Salle Roger Monier 13h30
Speaker: Nataliya PETRYK

“  Revealing the mechanisms linking genome replication and epigenome maintenance « 

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Genome-wide measurement of DNA replication fork directionality and quantification of DNA replication initiation and termination with Okazaki fragment sequencing

OK-seq is a technique that sequences strand-specific Okazaki fragments to map replication initiation and termination in mammalian genomes. It quantifies fork directionality, revealing replication dynamics at high resolution. N. Petryk team contributes to this work to provide detailed protocols for OK-seq in human cells and yeast, alongside bioinformatics pipelines.

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Monitoring Chk1 kinase activity dynamics in live single cell imaging assays

The ATR/Chk1 pathway regulates cell cycle progression, especially during DNA damage by inducing arrest for repair. Beyond damage response, Chk1 prevents premature mitosis during normal S phase, maintaining genome integrity. The Gavet team developed a FRET-based reporter to monitor Chk1 activity in live single cells with high sensitivity. This tool reveals Chk1 dynamics during normal and stressed conditions.

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Changes in the architecture and abundance of replication intermediates at UV-stalled replication forks in human cells

This is a collaborative effort of the Kannouche and Mazon/LeCam teams of the unit. DNA lesions during S phase challenge genome stability, managed by DNA damage tolerance (DDT) via TLS polymerases or recombination. Using electron microscopy, we show TLS polymerase η acts at replication forks to prevent gaps after UV damage. We outline a timeline of UV damage tolerance highlighting polη’s crucial role in DNA synthesis continuity.

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